PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G10640.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 710aa    MW: 79018.7 Da    PI: 6.1724
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G10640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.5e-2770160188
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +    +++++ r+ tr+gCka+l++kk   +kw+vtk+ ++HnH 
  OPUNC03G10640.2  70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEslhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKNHNHG 160
                      6*******************************************99999899999***********************************5 PP

2FAR186.63.7e-27207300290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + +k      ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l 
  OPUNC03G10640.2 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLL 300
                      9******************************************9999999999999***********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2470160IPR004330FAR1 DNA binding domain
PfamPF031011.1E-24207300IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MEGVVTSTVS EPKQDNEPTD SSTELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCESLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKPHAG EHHDCDIMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQS NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSDEDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAREVRH VSESSCLAAN  480
RKEDSSQKYQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA  540
DGQYRLLAAP IEAVPISYRP AEPIQQPQRN FPNSGPLPGF LPKPNKRGKG PNSLVHATAL  600
ACGARVVPPE EAASLIKAIE SKIRSGGATI ANLSSSSLTP LIPEVTSMSS SSEDDEENDH  660
SEPLMVSVEH NCRDQSSEEM KLEADPSELE TEAENCSAQP ENENNGPTHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666410.0AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630687.10.0PREDICTED: uncharacterized protein LOC4332292
TrEMBLA0A0E0KBF80.0A0A0E0KBF8_ORYPU; Uncharacterized protein
STRINGLOC_Os03g15040.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.17e-31FAR1 family protein